Genetic data provide evidence for wind-mediated transmission of highly pathogenic avian influenza.
Identifieur interne : 000146 ( Main/Exploration ); précédent : 000145; suivant : 000147Genetic data provide evidence for wind-mediated transmission of highly pathogenic avian influenza.
Auteurs : Rolf J F. Ypma [Pays-Bas] ; Marcel Jonges ; Arnaud Bataille ; Arjan Stegeman ; Guus Koch ; Michiel Van Boven ; Marion Koopmans ; W Marijn Van Ballegooijen ; Jacco WallingaSource :
- The Journal of infectious diseases [ 1537-6613 ] ; 2013.
Descripteurs français
- KwdFr :
- ARN viral (génétique), Animaux (MeSH), Grippe chez les oiseaux (transmission), Grippe chez les oiseaux (virologie), Grippe chez les oiseaux (épidémiologie), Maladies de la volaille (transmission), Maladies de la volaille (virologie), Maladies de la volaille (épidémiologie), Pays-Bas (épidémiologie), Sous-type H7N7 du virus de la grippe A (génétique), Sous-type H7N7 du virus de la grippe A (isolement et purification), Vent (MeSH), Volaille (MeSH), Épidémies de maladies (MeSH), Épidémiologie moléculaire (MeSH).
- MESH :
- génétique : ARN viral, Sous-type H7N7 du virus de la grippe A.
- isolement et purification : Sous-type H7N7 du virus de la grippe A.
- virologie : Grippe chez les oiseaux, Maladies de la volaille.
- épidémiologie : Grippe chez les oiseaux, Maladies de la volaille, Pays-Bas.
- Animaux, Vent, Volaille, Épidémies de maladies, Épidémiologie moléculaire.
- Wicri :
- geographic : Pays-Bas.
English descriptors
- KwdEn :
- Animals (MeSH), Disease Outbreaks (MeSH), Influenza A Virus, H7N7 Subtype (genetics), Influenza A Virus, H7N7 Subtype (isolation & purification), Influenza in Birds (epidemiology), Influenza in Birds (transmission), Influenza in Birds (virology), Molecular Epidemiology (MeSH), Netherlands (epidemiology), Poultry (MeSH), Poultry Diseases (epidemiology), Poultry Diseases (transmission), Poultry Diseases (virology), RNA, Viral (genetics), Wind (MeSH).
- MESH :
- chemical , genetics : RNA, Viral.
- geographic , epidemiology : Netherlands.
- epidemiology : Influenza in Birds, Poultry Diseases.
- genetics : Influenza A Virus, H7N7 Subtype.
- isolation & purification : Influenza A Virus, H7N7 Subtype.
- transmission : Influenza in Birds, Poultry Diseases.
- virology : Influenza in Birds, Poultry Diseases.
- Animals, Disease Outbreaks, Molecular Epidemiology, Poultry, Wind.
Abstract
Outbreaks of highly pathogenic avian influenza in poultry can cause severe economic damage and represent a public health threat. Development of efficient containment measures requires an understanding of how these influenza viruses are transmitted between farms. However, the actual mechanisms of interfarm transmission are largely unknown. Dispersal of infectious material by wind has been suggested, but never demonstrated, as a possible cause of transmission between farms. Here we provide statistical evidence that the direction of spread of avian influenza A(H7N7) is correlated with the direction of wind at date of infection. Using detailed genetic and epidemiological data, we found the direction of spread by reconstructing the transmission tree for a large outbreak in the Netherlands in 2003. We conservatively estimate the contribution of a possible wind-mediated mechanism to the total amount of spread during this outbreak to be around 18%.
DOI: 10.1093/infdis/jis757
PubMed: 23230058
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genetic data provide evidence for wind-mediated transmission of highly pathogenic avian influenza.</title><author><name sortKey="Ypma, Rolf J F" sort="Ypma, Rolf J F" uniqKey="Ypma R" first="Rolf J F" last="Ypma">Rolf J F. Ypma</name><affiliation wicri:level="1"><nlm:affiliation>Center for Infectious Disease Control, National Institute of Public Health and the Environment, Bilthoven, The Netherlands. rolf.ypma@rivm.nl</nlm:affiliation><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Center for Infectious Disease Control, National Institute of Public Health and the Environment, Bilthoven</wicri:regionArea><wicri:noRegion>Bilthoven</wicri:noRegion></affiliation></author><author><name sortKey="Jonges, Marcel" sort="Jonges, Marcel" uniqKey="Jonges M" first="Marcel" last="Jonges">Marcel Jonges</name></author><author><name sortKey="Bataille, Arnaud" sort="Bataille, Arnaud" uniqKey="Bataille A" first="Arnaud" last="Bataille">Arnaud Bataille</name></author><author><name sortKey="Stegeman, Arjan" sort="Stegeman, Arjan" uniqKey="Stegeman A" first="Arjan" last="Stegeman">Arjan Stegeman</name></author><author><name sortKey="Koch, Guus" sort="Koch, Guus" uniqKey="Koch G" first="Guus" last="Koch">Guus Koch</name></author><author><name sortKey="Van Boven, Michiel" sort="Van Boven, Michiel" uniqKey="Van Boven M" first="Michiel" last="Van Boven">Michiel Van Boven</name></author><author><name sortKey="Koopmans, Marion" sort="Koopmans, Marion" uniqKey="Koopmans M" first="Marion" last="Koopmans">Marion Koopmans</name></author><author><name sortKey="Van Ballegooijen, W Marijn" sort="Van Ballegooijen, W Marijn" uniqKey="Van Ballegooijen W" first="W Marijn" last="Van Ballegooijen">W Marijn Van Ballegooijen</name></author><author><name sortKey="Wallinga, Jacco" sort="Wallinga, Jacco" uniqKey="Wallinga J" first="Jacco" last="Wallinga">Jacco Wallinga</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2013">2013</date><idno type="RBID">pubmed:23230058</idno><idno type="pmid">23230058</idno><idno type="doi">10.1093/infdis/jis757</idno><idno type="wicri:Area/Main/Corpus">000152</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000152</idno><idno type="wicri:Area/Main/Curation">000152</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000152</idno><idno type="wicri:Area/Main/Exploration">000152</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genetic data provide evidence for wind-mediated transmission of highly pathogenic avian influenza.</title><author><name sortKey="Ypma, Rolf J F" sort="Ypma, Rolf J F" uniqKey="Ypma R" first="Rolf J F" last="Ypma">Rolf J F. Ypma</name><affiliation wicri:level="1"><nlm:affiliation>Center for Infectious Disease Control, National Institute of Public Health and the Environment, Bilthoven, The Netherlands. rolf.ypma@rivm.nl</nlm:affiliation><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Center for Infectious Disease Control, National Institute of Public Health and the Environment, Bilthoven</wicri:regionArea><wicri:noRegion>Bilthoven</wicri:noRegion></affiliation></author><author><name sortKey="Jonges, Marcel" sort="Jonges, Marcel" uniqKey="Jonges M" first="Marcel" last="Jonges">Marcel Jonges</name></author><author><name sortKey="Bataille, Arnaud" sort="Bataille, Arnaud" uniqKey="Bataille A" first="Arnaud" last="Bataille">Arnaud Bataille</name></author><author><name sortKey="Stegeman, Arjan" sort="Stegeman, Arjan" uniqKey="Stegeman A" first="Arjan" last="Stegeman">Arjan Stegeman</name></author><author><name sortKey="Koch, Guus" sort="Koch, Guus" uniqKey="Koch G" first="Guus" last="Koch">Guus Koch</name></author><author><name sortKey="Van Boven, Michiel" sort="Van Boven, Michiel" uniqKey="Van Boven M" first="Michiel" last="Van Boven">Michiel Van Boven</name></author><author><name sortKey="Koopmans, Marion" sort="Koopmans, Marion" uniqKey="Koopmans M" first="Marion" last="Koopmans">Marion Koopmans</name></author><author><name sortKey="Van Ballegooijen, W Marijn" sort="Van Ballegooijen, W Marijn" uniqKey="Van Ballegooijen W" first="W Marijn" last="Van Ballegooijen">W Marijn Van Ballegooijen</name></author><author><name sortKey="Wallinga, Jacco" sort="Wallinga, Jacco" uniqKey="Wallinga J" first="Jacco" last="Wallinga">Jacco Wallinga</name></author></analytic><series><title level="j">The Journal of infectious diseases</title><idno type="eISSN">1537-6613</idno><imprint><date when="2013" type="published">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals (MeSH)</term><term>Disease Outbreaks (MeSH)</term><term>Influenza A Virus, H7N7 Subtype (genetics)</term><term>Influenza A Virus, H7N7 Subtype (isolation & purification)</term><term>Influenza in Birds (epidemiology)</term><term>Influenza in Birds (transmission)</term><term>Influenza in Birds (virology)</term><term>Molecular Epidemiology (MeSH)</term><term>Netherlands (epidemiology)</term><term>Poultry (MeSH)</term><term>Poultry Diseases (epidemiology)</term><term>Poultry Diseases (transmission)</term><term>Poultry Diseases (virology)</term><term>RNA, Viral (genetics)</term><term>Wind (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN viral (génétique)</term><term>Animaux (MeSH)</term><term>Grippe chez les oiseaux (transmission)</term><term>Grippe chez les oiseaux (virologie)</term><term>Grippe chez les oiseaux (épidémiologie)</term><term>Maladies de la volaille (transmission)</term><term>Maladies de la volaille (virologie)</term><term>Maladies de la volaille (épidémiologie)</term><term>Pays-Bas (épidémiologie)</term><term>Sous-type H7N7 du virus de la grippe A (génétique)</term><term>Sous-type H7N7 du virus de la grippe A (isolement et purification)</term><term>Vent (MeSH)</term><term>Volaille (MeSH)</term><term>Épidémies de maladies (MeSH)</term><term>Épidémiologie moléculaire (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Viral</term></keywords><keywords scheme="MESH" type="geographic" qualifier="epidemiology" xml:lang="en"><term>Netherlands</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Influenza in Birds</term><term>Poultry Diseases</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Influenza A Virus, H7N7 Subtype</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN viral</term><term>Sous-type H7N7 du virus de la grippe A</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Influenza A Virus, H7N7 Subtype</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Sous-type H7N7 du virus de la grippe A</term></keywords><keywords scheme="MESH" qualifier="transmission" xml:lang="en"><term>Influenza in Birds</term><term>Poultry Diseases</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Grippe chez les oiseaux</term><term>Maladies de la volaille</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Influenza in Birds</term><term>Poultry Diseases</term></keywords><keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Grippe chez les oiseaux</term><term>Maladies de la volaille</term><term>Pays-Bas</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Disease Outbreaks</term><term>Molecular Epidemiology</term><term>Poultry</term><term>Wind</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Vent</term><term>Volaille</term><term>Épidémies de maladies</term><term>Épidémiologie moléculaire</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Pays-Bas</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Outbreaks of highly pathogenic avian influenza in poultry can cause severe economic damage and represent a public health threat. Development of efficient containment measures requires an understanding of how these influenza viruses are transmitted between farms. However, the actual mechanisms of interfarm transmission are largely unknown. Dispersal of infectious material by wind has been suggested, but never demonstrated, as a possible cause of transmission between farms. Here we provide statistical evidence that the direction of spread of avian influenza A(H7N7) is correlated with the direction of wind at date of infection. Using detailed genetic and epidemiological data, we found the direction of spread by reconstructing the transmission tree for a large outbreak in the Netherlands in 2003. We conservatively estimate the contribution of a possible wind-mediated mechanism to the total amount of spread during this outbreak to be around 18%.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">23230058</PMID><DateCompleted><Year>2013</Year><Month>04</Month><Day>04</Day></DateCompleted><DateRevised><Year>2013</Year><Month>02</Month><Day>05</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1537-6613</ISSN><JournalIssue CitedMedium="Internet"><Volume>207</Volume><Issue>5</Issue><PubDate><Year>2013</Year><Month>Mar</Month><Day>01</Day></PubDate></JournalIssue><Title>The Journal of infectious diseases</Title><ISOAbbreviation>J. Infect. Dis.</ISOAbbreviation></Journal><ArticleTitle>Genetic data provide evidence for wind-mediated transmission of highly pathogenic avian influenza.</ArticleTitle><Pagination><MedlinePgn>730-5</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1093/infdis/jis757</ELocationID><Abstract><AbstractText>Outbreaks of highly pathogenic avian influenza in poultry can cause severe economic damage and represent a public health threat. Development of efficient containment measures requires an understanding of how these influenza viruses are transmitted between farms. However, the actual mechanisms of interfarm transmission are largely unknown. Dispersal of infectious material by wind has been suggested, but never demonstrated, as a possible cause of transmission between farms. Here we provide statistical evidence that the direction of spread of avian influenza A(H7N7) is correlated with the direction of wind at date of infection. Using detailed genetic and epidemiological data, we found the direction of spread by reconstructing the transmission tree for a large outbreak in the Netherlands in 2003. We conservatively estimate the contribution of a possible wind-mediated mechanism to the total amount of spread during this outbreak to be around 18%.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ypma</LastName><ForeName>Rolf J F</ForeName><Initials>RJ</Initials><AffiliationInfo><Affiliation>Center for Infectious Disease Control, National Institute of Public Health and the Environment, Bilthoven, The Netherlands. rolf.ypma@rivm.nl</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jonges</LastName><ForeName>Marcel</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Bataille</LastName><ForeName>Arnaud</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Stegeman</LastName><ForeName>Arjan</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Koch</LastName><ForeName>Guus</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>van Boven</LastName><ForeName>Michiel</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Koopmans</LastName><ForeName>Marion</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>van Ballegooijen</LastName><ForeName>W Marijn</ForeName><Initials>WM</Initials></Author><Author ValidYN="Y"><LastName>Wallinga</LastName><ForeName>Jacco</ForeName><Initials>J</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2012</Year><Month>12</Month><Day>10</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>J Infect Dis</MedlineTA><NlmUniqueID>0413675</NlmUniqueID><ISSNLinking>0022-1899</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012367">RNA, Viral</NameOfSubstance></Chemical></ChemicalList><CitationSubset>AIM</CitationSubset><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004196" MajorTopicYN="Y">Disease Outbreaks</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D053126" MajorTopicYN="N">Influenza A Virus, H7N7 Subtype</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005585" MajorTopicYN="N">Influenza in Birds</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="Y">epidemiology</QualifierName><QualifierName UI="Q000635" MajorTopicYN="Y">transmission</QualifierName><QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017720" MajorTopicYN="N">Molecular Epidemiology</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009426" MajorTopicYN="N" Type="Geographic">Netherlands</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011200" MajorTopicYN="N">Poultry</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D011201" MajorTopicYN="N">Poultry Diseases</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="Y">epidemiology</QualifierName><QualifierName UI="Q000635" MajorTopicYN="Y">transmission</QualifierName><QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012367" MajorTopicYN="N">RNA, Viral</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014919" MajorTopicYN="Y">Wind</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2012</Year><Month>12</Month><Day>12</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2012</Year><Month>12</Month><Day>12</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2013</Year><Month>4</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">23230058</ArticleId><ArticleId IdType="pii">jis757</ArticleId><ArticleId IdType="doi">10.1093/infdis/jis757</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Pays-Bas</li></country></list><tree><noCountry><name sortKey="Bataille, Arnaud" sort="Bataille, Arnaud" uniqKey="Bataille A" first="Arnaud" last="Bataille">Arnaud Bataille</name><name sortKey="Jonges, Marcel" sort="Jonges, Marcel" uniqKey="Jonges M" first="Marcel" last="Jonges">Marcel Jonges</name><name sortKey="Koch, Guus" sort="Koch, Guus" uniqKey="Koch G" first="Guus" last="Koch">Guus Koch</name><name sortKey="Koopmans, Marion" sort="Koopmans, Marion" uniqKey="Koopmans M" first="Marion" last="Koopmans">Marion Koopmans</name><name sortKey="Stegeman, Arjan" sort="Stegeman, Arjan" uniqKey="Stegeman A" first="Arjan" last="Stegeman">Arjan Stegeman</name><name sortKey="Van Ballegooijen, W Marijn" sort="Van Ballegooijen, W Marijn" uniqKey="Van Ballegooijen W" first="W Marijn" last="Van Ballegooijen">W Marijn Van Ballegooijen</name><name sortKey="Van Boven, Michiel" sort="Van Boven, Michiel" uniqKey="Van Boven M" first="Michiel" last="Van Boven">Michiel Van Boven</name><name sortKey="Wallinga, Jacco" sort="Wallinga, Jacco" uniqKey="Wallinga J" first="Jacco" last="Wallinga">Jacco Wallinga</name></noCountry><country name="Pays-Bas"><noRegion><name sortKey="Ypma, Rolf J F" sort="Ypma, Rolf J F" uniqKey="Ypma R" first="Rolf J F" last="Ypma">Rolf J F. Ypma</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/GrippePaysBasV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000146 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000146 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Sante
|area= GrippePaysBasV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:23230058
|texte= Genetic data provide evidence for wind-mediated transmission of highly pathogenic avian influenza.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:23230058" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a GrippePaysBasV1
| This area was generated with Dilib version V0.6.35. |  |